1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtacgctctttattcatctatgcagcttataaagcgtatgcgcaaaagttagaacttgcaagaaatgtcataactgcttcctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCCTCAAGAGTGGAGAAGGAATATTTCAAGCCTACATATTCAGCAAGCATT
species | Arabidopsis thaliana |
transcript | AT1G73020.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCEST: gi|116423940|gb|EG466532.1|EG466532
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: GATGGTTCTTTACCTTATCTTAAGTACAGTTACCGAAAATATCGAGCTAG GACGAAGAAGAAAATGGAAGATGGATCATCAAEST: gi|116423946|gb|EG466538.1|EG466538
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAA
EST: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCEST: gi|116435865|gb|EG478457.1|EG478457
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCEST: gi|116436463|gb|EG479055.1|EG479055
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCEST: gi|116435910|gb|EG478502.1|EG478502
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG GACGAAGAGGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCEST: gi|116436478|gb|EG479070.1|EG479070
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCEST: gi|116436399|gb|EG478991.1|EG478991
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCEST: gi|116436465|gb|EG479057.1|EG479057
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCEST: gi|116423949|gb|EG466541.1|EG466541
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: GATGGTTCTTTACCTTATCTTAAGTACAGTTACCGAAAATATCGAGCTAG GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCEST: gi|116423860|gb|EG466452.1|EG466452
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCEST: gi|116423780|gb|EG466372.1|EG466372
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCEST: gi|116436460|gb|EG479052.1|EG479052
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCEST: gi|116436362|gb|EG478954.1|EG478954
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: GGTGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCEST: gi|116436484|gb|EG479076.1|EG479076
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCEST: gi|116436480|gb|EG479072.1|EG479072
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCEST: gi|116436488|gb|EG479080.1|EG479080
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCEST: gi|116436474|gb|EG479066.1|EG479066
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCEST: gi|116435879|gb|EG478471.1|EG478471
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCEST: gi|116432868|gb|EG475460.1|EG475460
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG GACGAAGAAGAAAATGGAAGATTGATCATCAACAGGGAAAATTCAAATAGCEST: gi|116436404|gb|EG478996.1|EG478996
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCEST: gi|116423711|gb|EG466303.1|EG466303
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCEST: gi|116436467|gb|EG479059.1|EG479059
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCEST: gi|116432873|gb|EG475465.1|EG475465
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG GACGAAGAAGAAAATGGAAGATTGATCATCAACAGGGAAAATTCAAATAGCEST: gi|116423947|gb|EG466539.1|EG466539
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: GATGGTTCTTTACCTTATCTTAAGTACAGTTACCGAAAATATCGAGCTAG GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCEST: gi|116436479|gb|EG479071.1|EG479071
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCEST: gi|116436359|gb|EG478951.1|EG478951
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: GGTGGTTCTTTACCTTATCTTAAGTACAGATACCGAAAATATCGAGCTAG GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCEST: gi|116423849|gb|EG466441.1|EG466441
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCEST: gi|116436402|gb|EG478994.1|EG478994
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: GATGGTTCTTTACCTTATTTTAAGTACAGCTACCGAAAATATCGAGCTAG GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCEST: gi|116436468|gb|EG479060.1|EG479060
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCEST: gi|116423710|gb|EG466302.1|EG466302
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCEST: gi|116423855|gb|EG466447.1|EG466447
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: GGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCEST: gi|116436486|gb|EG479078.1|EG479078
genomic: GGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCEST: gi|116432871|gb|EG475463.1|EG475463
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG GACGAAGAAGAAAATGGAAGATTGATCATCAACAGGGAAAATTCAAATAGCEST: gi|116423854|gb|EG466446.1|EG466446
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: GGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCEST: gi|116457871|gb|EG500463.1|EG500463
genomic: GGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCEST: gi|116435877|gb|EG478469.1|EG478469
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCEST: gi|116436469|gb|EG479061.1|EG479061
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAG GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCEST: gi|116423941|gb|EG466533.1|EG466533
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
EST: GATGGTTCTTTACCTTATCTTAAGTACAGTTACCGAAAATATCGAGCTAG GACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
genomic: GATGGTTCTTTACCTTATCTTAAGTACAGCTACCGAAAATATCGAGCTAGgtacgctctt ... ctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGC
gtatgcgcaaaagttagaacttgcaagaaatgtcataactgcttcctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCCTCAAGAGTGGAGAAGGAATATTTCAAGCCTACATATTCAGCAAGCATT
tcataac putative branch site (score: 2)
ctgcttcctttttcc CT-rich tract
aaaagtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgctctttattcatctatgcagcttataaagcgtatgcgcaaaagttagaacttgcaagaaatgtcataactgcttcctttttccagGACGAAGAAGAAAATGGAAGATGGATCATCAACAGGGAAAATTCAAATAGCCTCAAGAGTGGAGAAGGAATATTTCAAGCCTACATATTCAGCAAGCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG