1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtacaaaaagaaaagtctctgaaatcatctattttcttcagaaatagacttttgaaaagatgagctttcttttggacagTCATTTGGAGAGGCTGTTGCGATAAACAACTCGGTTCCTCAAGGTCTAAGCAGCTCGATATTCACTCGGAACCCTGAAAACATCTTCAGGTGGATCGG
species | Arabidopsis thaliana |
transcript | AT1G54100.2 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TCGTCAAAGAAGAGCTATTTGCTCCGGTTCTATATGTTCTAAAGTTTAAG TCATTTGGAGAGGCTGTTGCGATAAACAACTCGGTTCCTCAAGGTEST: gi|116420799|gb|EG463391.1|EG463391
genomic: TCGTCAAAGAAGAGCTATTTGCTCCGGTTCTATATGTTCTAAAGTTTAAGgtacaaaaag ... ttttggacagTCATTTGGAGAGGCTGTTGCGATAAACAACTCGGTTCCTCAAGGT
EST: TCGTCAAAGAAGAGCTATTTGCTCCGGTTCTATATGTTCTAAAGTTTAAG TCATTTGGAGAGGCTGTTGCGATAAACAACTCGGTTCCTCAAGGTEST: gi|116420807|gb|EG463399.1|EG463399
genomic: TCGTCAAAGAAGAGCTATTTGCTCCGGTTCTATATGTTCTAAAGTTTAAGgtacaaaaag ... ttttggacagTCATTTGGAGAGGCTGTTGCGATAAACAACTCGGTTCCTCAAGGT
EST: TCGTCAAAGAAGAGCTATTTGCTCCGGTTCTATATGTTCTAAAGTTTAAG TCATTTGGAGAGGCTGTTGCGATAAACAACTCGGTTCCTCAAGGTEST: gi|124896564|gb|EH972778.1|EH972778
genomic: TCGTCAAAGAAGAGCTATTTGCTCCGGTTCTATATGTTCTAAAGTTTAAGgtacaaaaag ... ttttggacagTCATTTGGAGAGGCTGTTGCGATAAACAACTCGGTTCCTCAAGGT
EST: TTCTAAAGTTTAAG TCATTTGGAGAGGCTGTTGCGATAAACAACTCGGTTCCTCAAGGTCTAAGCEST: gi|86080345|gb|DR376102.1|DR376102
genomic: TTCTAAAGTTTAAGgtacaaaaag ... ttttggacagTCATTTGGAGAGGCTGTTGCGATAAACAACTCGGTTCCTCAAGGTCTAAGC
EST: TCGTCAAAGAAGAGCTATTTGCTCCGGTTCTATATGTTCTAAAGTTTAAG TCATTTGGAGAGGCTGTTGCGATAAACAACTCGGTTCCTCAAGGTCTAAGCEST: gi|86080922|gb|DR376679.1|DR376679
genomic: TCGTCAAAGAAGAGCTATTTGCTCCGGTTCTATATGTTCTAAAGTTTAAGgtacaaaaag ... ttttggacagTCATTTGGAGAGGCTGTTGCGATAAACAACTCGGTTCCTCAAGGTCTAAGC
EST: TCGTCAAAGAAGAGCTATTTGCTCCGGTTCTATATGTTCTAAAGTTTAAG TCATTTGGAGAGGCTGTTGCGATAAACAACTCGGTTCCTCAAGGTCTAAGCEST: gi|116414405|gb|EG456997.1|EG456997
genomic: TCGTCAAAGAAGAGCTATTTGCTCCGGTTCTATATGTTCTAAAGTTTAAGgtacaaaaag ... ttttggacagTCATTTGGAGAGGCTGTTGCGATAAACAACTCGGTTCCTCAAGGTCTAAGC
EST: TCGTCAAAGAAGAGCTATTTGCTCCGGTTCTATATGTTCTAAAGTTTAAG TCATTTGGAGAGGCTGTTGCGATAAACAACTCGGTTCCTCAAGGTCTAAGCEST: gi|116420795|gb|EG463387.1|EG463387
genomic: TCGTCAAAGAAGAGCTATTTGCTCCGGTTCTATATGTTCTAAAGTTTAAGgtacaaaaag ... ttttggacagTCATTTGGAGAGGCTGTTGCGATAAACAACTCGGTTCCTCAAGGTCTAAGC
EST: TCGTCAAAGAAGAGCTATTTGCTCCGGTTCTATATGTTCTAAAGTTTAAG TCATTTGGAGAGGCTGTTGCGATAAACAACTCGGTTCCTCAAGGT
genomic: TCGTCAAAGAAGAGCTATTTGCTCCGGTTCTATATGTTCTAAAGTTTAAGgtacaaaaag ... ttttggacagTCATTTGGAGAGGCTGTTGCGATAAACAACTCGGTTCCTCAAGGT
tcatctattttcttcagaaatagacttttgaaaagatgagctttcttttggacagTCATTTGGAGAGGCTGTTGCGATAAACAACTCGGTTCCTCAAGGTCTAAGCAGCTCGATATTCACTCGGAACCCTGAAAACATCTTCAGGTGGATCGG
ctttctttt CT-rich tract
tattttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaaaaagaaaagtctctgaaatcatctattttcttcagaaatagacttttgaaaagatgagctttcttttggacagTCATTTGGAGAGGCTGTTGCGATAAACAACTCGGTTCCTCAAGGTCTAAGCAGCTCGATATTCACTCGGAACCCTGAAAACATCTTCAGGTGGATCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA