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gtgaaccaaatttctgctcttacaattctcttttaggaatacacagtttctcatgtttgtgcaaagttgttgacaaacttgagacactgtattacagGGAATGGGTCCAAGGGTATTGTGGATAGGTATTGGAGGTTCAATTTTCTTTGGTGTTTTGGAAAAGACAAAGCAGATTCTTTCAGAGAGAAGCCAAAAGA
species | Arabidopsis thaliana |
transcript | AT1G34065.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATTGCATTAAGACGATAATAAGAGAAGAAGGTTCATCAGCTTTGTGGAAG GGAATGGGTCCAAGGGTATTGTGGATAGGTATTGGAGGTTCAATTTTCTTTEST: gi|116468199|gb|EG510791.1|EG510791
genomic: ATTGCATTAAGACGATAATAAGAGAAGAAGGTTCATCAGCTTTGTGGAAGgtgaaccaaa ... tgtattacagGGAATGGGTCCAAGGGTATTGTGGATAGGTATTGGAGGTTCAATTTTCTTT
EST: ATTGCATTAAGACGATAATAAGAGAAGAAGGTTCATCAGCTTTGTGGAAG GGAATGGGTCCAAGGGTATTGTGGATAGGTATTGGAGGTTCAATTTTCTTT
genomic: ATTGCATTAAGACGATAATAAGAGAAGAAGGTTCATCAGCTTTGTGGAAGgtgaaccaaa ... tgtattacagGGAATGGGTCCAAGGGTATTGTGGATAGGTATTGGAGGTTCAATTTTCTTT
acagtttctcatgtttgtgcaaagttgttgacaaacttgagacactgtattacagGGAATGGGTCCAAGGGTATTGTGGATAGGTATTGGAGGTTCAATTTTCTTTGGTGTTTTGGAAAAGACAAAGCAGATTCTTTCAGAGAGAAGCCAAAAGA
tgttgac putative branch site (score: 3)
tgtatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaccaaatttctgctcttacaattctcttttaggaatacacagtttctcatgtttgtgcaaagttgttgacaaacttgagacactgtattacagGGAATGGGTCCAAGGGTATTGTGGATAGGTATTGGAGGTTCAATTTTCTTTGGTGTTTTGGAAAAGACAAAGCAGATTCTTTCAGAGAGAAGCCAAAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC