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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatctgtgcctcccaaataaggttggagctattctggtaactataaaatactaacacaggccatgtatactttttcagGCAGCAGGCGAGTTTGACTTCTGATCTTAACACTAGCAATGATGCTTCTAGGAAAGTCCTTCAAATGTCCAGTGTCTTTCTTTTTACCTTATGATTTAAG

Basic information

species Arabidopsis thaliana
transcript AT1G07480.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116427915|gb|EG470507.1|EG470507
EST:     TGAAAGACGGGATCATGCATATAAACGATAAGGACATTCTCTTCAACAAA                         GCAGCAGGCGAGTTTGACTTCTGATCTTAACACTAGCAATGATGCTTCTAG
genomic: TGAAAGACGGGATCATGCATATAAACGATAAGGACATTCTCTTCAACAAAgtaatctgtg ... actttttcagGCAGCAGGCGAGTTTGACTTCTGATCTTAACACTAGCAATGATGCTTCTAG
EST: gi|116427931|gb|EG470523.1|EG470523
EST:     TGAAAGACGGGATCATGCATATAAACGATAAGGACATTCTCTTCAACAAA                         GCAGCAGGCGAGTTTGACTTCTGATCTTAACACTAGCAATGATACTTCTAG
genomic: TGAAAGACGGGATCATGCATATAAACGATAAGGACATTCTCTTCAACAAAgtaatctgtg ... actttttcagGCAGCAGGCGAGTTTGACTTCTGATCTTAACACTAGCAATGATGCTTCTAG
EST: gi|125053097|gb|EL124442.1|EL124442
EST:     GTAAAGACGGGATCATGCATATAAACGATAAGGACATTCTCTTCAACAAA                         GCAGCAGGCGAGTTTGACTT
genomic: G-AAAGACGGGATCATGCATATAAACGATAAGGACATTCTCTTCAACAAAgtaatctgtg ... actttttcagGCAGCAGGCGAGTTTGACTT
EST: gi|116427916|gb|EG470508.1|EG470508
EST:     TGAAAGACGGGATCATGCATATAAACGATAAGGACATTCTCTTCAACAAA                         GCAGCAGGCGAGTTTGACTTCTGATCTTAACACTAGCAACGATGCTTCTAG
genomic: TGAAAGACGGGATCATGCATATAAACGATAAGGACATTCTCTTCAACAAAgtaatctgtg ... actttttcagGCAGCAGGCGAGTTTGACTTCTGATCTTAACACTAGCAATGATGCTTCTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggagctattctggtaactataaaatactaacacaggccatgtatactttttcagGCAGCAGGCGAGTTTGACTTCTGATCTTAACACTAGCAATGATGCTTCTAGGAAAGTCCTTCAAATGTCCAGTGTCTTTCTTTTTACCTTATGATTTAAG
                         tactaac  putative branch site (score: 0)
                                            tactttttc  putative PPT
              taactataaaatacta  TA-rich tract