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gtaattcagtttttttgactaaaaatccatggaaaagtcctacttttactccaaaatcttccttttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAG
species | Arabidopsis thaliana |
transcript | AT5G62240.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAATEST: gi|116430547|gb|EG473139.1|EG473139
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
EST: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAATEST: gi|116430546|gb|EG473138.1|EG473138
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
EST: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAATEST: gi|116430548|gb|EG473140.1|EG473140
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
EST: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAATEST: gi|116430549|gb|EG473141.1|EG473141
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
EST: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAATEST: gi|116430536|gb|EG473128.1|EG473128
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
EST: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAATEST: gi|116430559|gb|EG473151.1|EG473151
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
EST: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAATEST: gi|116430537|gb|EG473129.1|EG473129
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
EST: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAATEST: gi|116430560|gb|EG473152.1|EG473152
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
EST: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAATEST: gi|116430541|gb|EG473133.1|EG473133
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
EST: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAATEST: gi|116430542|gb|EG473134.1|EG473134
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
EST: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAATEST: gi|116430555|gb|EG473147.1|EG473147
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
EST: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAATEST: gi|116430540|gb|EG473132.1|EG473132
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
EST: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAATEST: gi|116430552|gb|EG473144.1|EG473144
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
EST: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAATEST: gi|116430551|gb|EG473143.1|EG473143
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
EST: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAATEST: gi|116430556|gb|EG473148.1|EG473148
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
EST: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAATEST: gi|116430558|gb|EG473150.1|EG473150
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
EST: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAATEST: gi|116430544|gb|EG473136.1|EG473136
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
EST: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAATEST: gi|116430554|gb|EG473146.1|EG473146
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
EST: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAATEST: gi|116430538|gb|EG473130.1|EG473130
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
EST: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAG ATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
genomic: AGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGgtaattcagt ... ttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAAT
taaaaatccatggaaaagtcctacttttactccaaaatcttccttttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAG
tcttccttttcttgac CT-rich tract
tactttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattcagtttttttgactaaaaatccatggaaaagtcctacttttactccaaaatcttccttttcttgacagATATCAAGCAAAGAAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAATCAGAGCTCATGCAGGACAGATATTAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA