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gtatagccttcttagagattaatctttttcaggttttgtatctaaatactagaagtttaactgagacatgaaaatattgcagTCGGAAGCGGAACTGTTGGCTGAGAAGAGATGTGTTGCACACCTCACTGGAGAG
species | Arabidopsis thaliana |
transcript | AT5G58330.3 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTGTCAAGGATGTAGAAATTGATGACTACCTTCGCCAACGAATCGCCAAG TCGGAAGCGGAACTGTTGGCTGAGAAGAGATGTGTTGCACACCTCACTGGAEST: gi|124868672|gb|EH953109.1|EH953109
genomic: TTGTCAAGGATGTAGAAATTGATGACTACCTTCGCCAACGAATCGCCAAGgtatagcctt ... aatattgcagTCGGAAGCGGAACTGTTGGCTGAGAAGAGATGTGTTGCACACCTCACTGGA
EST: TAGAAATTGATGACTACCTTCGCCAACGAATCGCCAAG TCGGAAGCGGAACTGTTGGCTGAGAAGAGATGTGTTAGCACACCTCACTGGEST: gi|86078149|gb|DR373906.1|DR373906
genomic: TAGAAATTGATGACTACCTTCGCCAACGAATCGCCAAGgtatagcctt ... aatattgcagTCGGAAGCGGAACTGTTGGCTGAGAAGAGATGTGTT-GCACACCTCACTGG
EST: TTGTCAAGGATGTAGAAATTGATGACTACCTTCGCCAACGAATCGCCAAG TCGGAAGCGGAACTGTTGGCTGAGAAGAGATGTGTTGCACACCTCACTGGAEST: gi|86081501|gb|DR377258.1|DR377258
genomic: TTGTCAAGGATGTAGAAATTGATGACTACCTTCGCCAACGAATCGCCAAGgtatagcctt ... aatattgcagTCGGAAGCGGAACTGTTGGCTGAGAAGAGATGTGTTGCACACCTCACTGGA
EST: TTGTCAAGGATGTAGAAATTGATGACTACCTTCGCCAACGAATCGCCAAG TCGGAAGCGGAACTGTTGGCTGAGAAGAGATATGTTGCAC-C-TCACTGGAEST: gi|116454053|gb|EG496645.1|EG496645
genomic: TTGTCAAGGATGTAGAAATTGATGACTACCTTCGCCAACGAATCGCCAAGgtatagcctt ... aatattgcagTCGGAAGCGGAACTGTTGGCTGAGAAGAGATGTGTTGCACACCTCACTGGA
EST: TTGTCAAGGATGTAGAAATTGATGACTACCTTCGCCAACGAATCGCCAAG TCGGAAGCGGAACTGTTGGCTGAGAAGAGATGTGTTGCACACCTCACTGGAEST: gi|164022412|gb|ES116807.1|ES116807
genomic: TTGTCAAGGATGTAGAAATTGATGACTACCTTCGCCAACGAATCGCCAAGgtatagcctt ... aatattgcagTCGGAAGCGGAACTGTTGGCTGAGAAGAGATGTGTTGCACACCTCACTGGA
EST: TTGTCAAGGATGTAGAAATTGATGACTACCTTCGCCAACGAATCGCCAAG TCGGAAGCGGAACTGTTGGCEST: gi|86087424|gb|DR383183.1|DR383183
genomic: TTGTCAAGGATGTAGAAATTGATGACTACCTTCGCCAACGAATCGCCAAGgtatagcctt ... aatattgcagTCGGAAGCGGAACTGTTGGC
EST: CAAGGATGTAGAAATTGATGACTACCTTCGCCAACGAATCGCCAAG TCGGAAGCGGAACTGTTGGCTGAGAAGAGATGTGTTGCACACCTCACTGGAEST: gi|125201124|gb|EL216078.1|EL216078
genomic: CAAGGATGTAGAAATTGATGACTACCTTCGCCAACGAATCGCCAAGgtatagcctt ... aatattgcagTCGGAAGCGGAACTGTTGGCTGAGAAGAGATGTGTTGCACACCTCACTGGA
EST: CCAACGAATCGCCAAG TCGGAAGCGGAACTGTTGACTGAGAAGAGATGTGTTGCACACCTCACTGGAEST: gi|222357309|gb|GH718579.1|GH718579
genomic: CCAACGAATCGCCAAGgtatagcctt ... aatattgcagTCGGAAGCGGAACTGTTGGCTGAGAAGAGATGTGTTGCACACCTCACTGGA
EST: TTGTCAAGGATGTAGAAATTGATGACTACCTTCGCCAACGAATCGCCAAG TCGGAAGCGGAACTGTTGGCTGAGAAGAGATGTGTTGCACACCTCACTGGA
genomic: TTGTCAAGGATGTAGAAATTGATGACTACCTTCGCCAACGAATCGCCAAGgtatagcctt ... aatattgcagTCGGAAGCGGAACTGTTGGCTGAGAAGAGATGTGTTGCACACCTCACTGGA
ttcaggttttgtatctaaatactagaagtttaactgagacatgaaaatattgcagTCGGAAGCGGAACTGTTGGCTGAGAAGAGATGTGTTGCACACCTCACTGGAGAG
gtttaac putative branch site (score: 3)
ttttgtatctaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatagccttcttagagattaatctttttcaggttttgtatctaaatactagaagtttaactgagacatgaaaatattgcagTCGGAAGCGGAACTGTTGGCTGAGAAGAGATGTGTTGCACACCTCACTGGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA