1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gcaagtgttttcagtgactgttgttgatctcttactctcttttactgtcactcagattcttaaggttgaatatggtgctgcagGGAAACATGAAGCTTAACGAAGACCAGTTGGCTTCTCTTTCAAGTCAAAAAGCAGTAAATGAGTTTCTAGAAACTCAAAGAGAGAGCATCACCAACATAA
species | Arabidopsis thaliana |
transcript | AT5G55220.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTGAGGAACAAGGAAGACAGTTTTATGGAGCTAGGCTTCTAGAGATTCAG GGAAACATGAAGCTTAACGAAGACCAGTTGGCTTCTCTTTCAAGTCAAAAAEST: gi|124898061|gb|EH974275.1|EH974275
genomic: TTGAGGAACAAGGAAGACAGTTTTATGGAGCTAGGCTTCTAGAGATTCAGgcaagtgttt ... ggtgctgcagGGAAACATGAAGCTTAACGAAGACCAGTTGGCTTCTCTTTCAAGTCAAAAA
EST: CTTCTAGAGATTCAG GGAAACATGAAGCTTAACGAAGACCAGTTGGCTTCTCTTTCAAGTCAAAAAEST: gi|125037550|gb|EL109819.1|EL109819
genomic: CTTCTAGAGATTCAGgcaagtgttt ... ggtgctgcagGGAAACATGAAGCTTAACGAAGACCAGTTGGCTTCTCTTTCAAGTCAAAAA
EST: TTGAGGAACAAGGAAGACAGTTTTATGGAGCTAGGCTTCTAGAGATTCAG GGAAACATGAAGCTTAACGAAGACCAGTTGGCTTCTCTT
genomic: TTGAGGAACAAGGAAGACAGTTTTATGGAGCTAGGCTTCTAGAGATTCAGgcaagtgttt ... ggtgctgcagGGAAACATGAAGCTTAACGAAGACCAGTTGGCTTCTCTT
ctcttactctcttttactgtcactcagattcttaaggttgaatatggtgctgcagGGAAACATGAAGCTTAACGAAGACCAGTTGGCTTCTCTTTCAAGTCAAAAAGCAGTAAATGAGTTTCTAGAAACTCAAAGAGAGAGCATCACCAACATAA
ctcttac putative branch site (score: 3)
attcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagtgttttcagtgactgttgttgatctcttactctcttttactgtcactcagattcttaaggttgaatatggtgctgcagGGAAACATGAAGCTTAACGAAGACCAGTTGGCTTCTCTTTCAAGTCAAAAAGCAGTAAATGAGTTTCTAGAAACTCAAAGAGAGAGCATCACCAACATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA