Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggtgcatttggagttgtaatttgtatcatgtttctaaattcataaattctcggggattttgactcctgagagtttgtaactttcttaacttcgtgtgcagGAGTGTTCTGTGAATCCCCAGGGAATCGCGGCCTTAACAGTTCCACAATCACTTATCAAACACATGCAGAGTCATTCCATTCACTGTATCGCATCGGGCG

Basic information

species Arabidopsis thaliana
transcript AT5G11490.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164070668|gb|ES116214.1|ES116214
EST:     CAGGCGCCTTCCAACAAAAATGGCGCCAATTGCCAATATCACTAACACAG                         GAGTGTTCTGTGAATCCCCAGGGA
genomic: CAGGCGCCTTCCAACAAAAATGGCGCCAATTGCCAATATCACTAACACAGgtttttttcc ... tcgtgtgcagGAGTGTTCTGTGAATCCCCAGGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attctcggggattttgactcctgagagtttgtaactttcttaacttcgtgtgcagGAGTGTTCTGTGAATCCCCAGGGAATCGCGGCCTTAACAGTTCCACAATCACTTATCAAACACATGCAGAGTCATTCCATTCACTGTATCGCATCGGGCG
                                     tcttaac  putative branch site (score: 2)
                                   tttcttaa  TA-rich tract