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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcagagacctttattcttattcccagcgaattatctttcttaaaaactgtcttttactgttttttggatgaaacatacctcttcaagtcaggacattgttaacaccatttagatatttaatgtctcctttttttctttcccctgtgtagAGAATATCGGCAAAGGATGCTCTTGATGCCGAGTACTTTTGGACTGATCCGTTGCCATGTGACCCAAAGAG

Basic information

species Arabidopsis thaliana
transcript AT5G10270.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G10270.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: LOC_Os01g72790.1 (Oryza sativa), 3'ss of exon 10
gtatcagagacctttattcttattcccagcgaattatctttcttaaaaactgtcttttactgttttttggatgaaacatacctcttcaagtcaggacattgttaacaccatttagatatt-taatgtctcctttttttc-tttcccctgtgtagAGAATATCGGCAAAGGATGCTCTTGATGCCGAGTACTTTTGGACTGATCCGTTGCCATGTGACCCAAAGAG
                                                       | | |||  ||    |  |    |  || ||||     |    || | |   |  |||   | || |  | | |  |     || |||    | |  |||| ||||||||||| ||||| ||||| || ||||| || ||||||||||| || || ||||| ||||||||
------------------------------------------------------gtatgctgcatt---aaccagttgtgacttttcagacgtgtcacttatcatttctgtttgctttttgttctatatattgacaatcattttggttatacagAGGATATCGGCAAAAGATGCACTTGACGCGGAGTATTTCTGGACTGATCCCTTACCGTGTGATCCAAAGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgttaacaccatttagatatttaatgtctcctttttttctttcccctgtgtagAGAATATCGGCAAAGGATGCTCTTGATGCCGAGTACTTTTGGACTGATCCGTTGCCATGTGACCCAAAGAG
                   tatttaatgtctcctt  CT-rich tract
            atttagatatttaatg  TA-rich tract