Sequence
atgc intronic sequence ATGC exonic sequencegttcatctattgactacattgtgatgcttttcctctcttttctttatcttcgggctaatacggatctagatgattagtttgatcattttgtcacagaatggtgtgggtttagggatagtcgcttagataattttcttcttccttaaacagGTTTTCGATGCGCTAAGAACAACAATGTTCATATTAGGAATGATGTGTGTATTCATAGGCATTTCTTTACTAGCACCTGATGATACAAGAGGCAATGAGA
Basic information
species | Arabidopsis thaliana |
transcript | AT3G26670.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G26670.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA16G26550.1 (Glycine max), 3'ss of exon 11
gttcatctattgactacattgtgatgcttttcctctcttttctttatcttcgggctaatacggat--ctagatgattagtttgatcattttgtcacagaatg-gtgtgggtttagggatagtcgcttagataattttcttcttccttaaacagGTTTTCGATGCGCTAAGAACAACAATGTTCATATTAGGAATGATGTGTGTATTCATAGGCATTTCTTTACTAGCACCTGATGATACAAGAGGCAATGAGA
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------------------------------------------------ttttgtatggtgtgaatgtctgaatcattacattgatgaat-----gctgaatgtgttttgataatgagtttaggggtgatgtaatactaccttcctgaacgcagGTATTTGATGCATTAAGGACAACGATGTTTATACTTGGAATGATGTGTGTGTTTATTGGCATTTCTTTGCTGGCACCTGATGAATCAAAAG---------
upper sequence: AT3G26670.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA02G07510.2 (Glycine max), 3'ss of exon 11
gttcatctattgactacattgtgatgcttttcctctcttttctttatcttcgggctaatacggatctagatgattagtttgatcattttgtcacagaatggtgtgggtttagggatagtcgcttagataattttcttcttccttaaa-cagGTTTTCGATGCGCTAAGAACAACAATGTTCATATTAGGAATGATGTGTGTATTCATAGGCATTTCTTTACTAGCACCTGATGATACAAGAGGCAATGAGA
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-----------------------------------------------tttttgtatggtgaatgtttgaatcattacattgatgaatg---ctgaatatgttttgataatgagtttaggtg-tgatgtaatacttaccttcctgaaagcagGTATTTGATGCATTAAGGACAACAATGTTTATGCTTGGAATGATGTGTGTGTTTATTGGCATTTCTTTGCTGGCACCTGATGAATCAAAAG---------
upper sequence: AT3G26670.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv14s0068g00780.t01 (Vitis vinifera), 3'ss of exon 10
gttcatctattgactacattgtgatgcttttcctctcttttctttatcttcgggctaatacggatctagatgattagtttgatcattttgtcacagaatggtgtgggtttagggatagtcgcttagataattttcttcttccttaaacagGTTTTCGATGCGCTAAGAACAACAATGTTCATATTAGGAATGATGTGTGTATTCATAGGCATTTCTTTACTAGCACCTGATGATACAAGAGGCAATGAGA
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--------------------------------------------aggcttc---ttgatgcttatagcaatgttcaattctattctctctctccc--ttctcttgagtttagacccatataataagctgcttcactgtttc-tcaagcagGTATTTGATACATTAAGGACAACAATGTTTATACTAGGAATGATGTCTGTGTTCATAGGCATTTCATTGCTGGCACCTGATGAGCCAAAAG---------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125313368|gb|EL327453.1|EL327453EST: GGACTTTCTTCTCCATCTGTACAGGATGCATTTACTTTCAAGAGTT-CAG GTTTTCGATGCGCTAAGAACAACAATGTTCATAT
genomic: GGACTTTCTTCTCCATCTGTACAGGATGCATTTACTTTCAAGAGTTTCAGgttcatctat ... ccttaaacagGTTTTCGATGCGCTAAGAACAACAATGTTCATAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaatggtgtgggtttagggatagtcgcttagataattttcttcttccttaaacagGTTTTCGATGCGCTAAGAACAACAATGTTCATATTAGGAATGATGTGTGTATTCATAGGCATTTCTTTACTAGCACCTGATGATACAAGAGGCAATGAGA
taattttcttcttcct CT-rich tract
ttagataattttctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttcatctattgactacattgtgatgcttttcctctcttttctttatcttcgggctaatacggatctagatgattagtttgatcattttgtcacagaatggtgtgggtttagggatagtcgcttagataattttcttcttccttaaacagGTTTTCGATGCGCTAAGAACAACAATGTTCATATTAGGAATGATGTGTGTATTCATAGGCATTTCTTTACTAGCACCTGATGATACAAGAGGCAATGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG