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gtgcgtattttgaactgttattcgctctcaaagaattgatttgttccctatgcttgaaaataagaaggaaaaaggcaaagtcttagcgagtgaagatcattctatcgtattctgaacttcttgagtgattccattgggcactgtattaattgttgtatttaaacagATTTCAACGGGCAGATGGTTGTCCAAAACTATTTGAAGAGAACTGGGCGTGAAGAGTGGGCAAAAATG
species | Arabidopsis thaliana |
transcript | AT1G51610.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CAAAAGTGAAGTGATTGGTCCTGGATCCTTCAGATTTAAAGCTGAAATAG ATTTCAACGGGCAGATGGTTGTCCAAAACTATTTGAAGAGAACTGGGCGTGEST: gi|125149115|gb|EL182442.1|EL182442
genomic: CAAAAGTGAAGTGATTGGTCCTGGATCCTTCAGATTTAAAGCTGAAATAGgtgcgtattt ... atttaaacagATTTCAACGGGCAGATGGTTGTCCAAAACTATTTGAAGAGAACTGGGCGTG
EST: ATCCTTCAGATTTAAAGCTGAAATAG ATTTCAACGGGCAGATGGTTGTCCAAAACTATTTGAAGAGAACTGGGCGTGEST: gi|86088026|gb|DR383785.1|DR383785
genomic: ATCCTTCAGATTTAAAGCTGAAATAGgtgcgtattt ... atttaaacagATTTCAACGGGCAGATGGTTGTCCAAAACTATTTGAAGAGAACTGGGCGTG
EST: CAAAAGTGAAGTGATTGGTCCTGGATCCTTCAGATTTAAAGCTGAAATAG ATTTCAACGGGCAGATGGTTGTCCAAAACTATTTGAAGAGAACTGGGCGTG
genomic: CAAAAGTGAAGTGATTGGTCCTGGATCCTTCAGATTTAAAGCTGAAATAGgtgcgtattt ... atttaaacagATTTCAACGGGCAGATGGTTGTCCAAAACTATTTGAAGAGAACTGGGCGTG
ctgaacttcttgagtgattccattgggcactgtattaattgttgtatttaaacagATTTCAACGGGCAGATGGTTGTCCAAAACTATTTGAAGAGAACTGGGCGTGAAGAGTGGGCAAAAATG
tattaat putative branch site (score: 2)
tgtattaattgttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgtattttgaactgttattcgctctcaaagaattgatttgttccctatgcttgaaaataagaaggaaaaaggcaaagtcttagcgagtgaagatcattctatcgtattctgaacttcttgagtgattccattgggcactgtattaattgttgtatttaaacagATTTCAACGGGCAGATGGTTGTCCAAAACTATTTGAAGAGAACTGGGCGTGAAGAGTGGGCAAAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA