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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgactctcctctattcacaggttctggatgtgtttttctgcacgtgactctaatcatagtaagacatgtttggtgttgtaatcagGTGACGCGCACAAAGAGCAGGTGGAAGTGCAGTCTGAAAGACGGGATCATGCATATAAACGATAAGGACATTCTCTTCAACAAA

Basic information

species Arabidopsis thaliana
transcript AT1G07480.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116427915|gb|EG470507.1|EG470507
EST:     GTGGCGAGGATATGAACACACAACACCTGGTTTTAGCTCAATTTGACAAG                         GTGACGCGCACAAAGAGCAGGTGGAAGTGCAGTCTGAAAGACGGGATCATG
genomic: GTGGCGAGGATATGAACACACAACACCTGGTTTTAGCTCAATTTGACAAGgtaatgactc ... ttgtaatcagGTGACGCGCACAAAGAGCAGGTGGAAGTGCAGTCTGAAAGACGGGATCATG
EST: gi|116427931|gb|EG470523.1|EG470523
EST:     TGGCGAGGATATTG-ACACACAACACCTGGTTTTAGCTCAATTTGACAAG                         GTGACGCGCACAAAGAGCAGGTGGAAGTGCAGTCTGAAAGACGGGATCATG
genomic: TGGCGAGGATA-TGAACACACAACACCTGGTTTTAGCTCAATTTGACAAGgtaatgactc ... ttgtaatcagGTGACGCGCACAAAGAGCAGGTGGAAGTGCAGTCTGAAAGACGGGATCATG
EST: gi|116427916|gb|EG470508.1|EG470508
EST:     TGGCGAGGATATTG-ACACACAACACCTGGTTTTAGCTCAATTTGACAAG                         GTGACGCGCACAAAGAGCAGGTGGAAGTGCAGTCTGAAAGACGGGATCATG
genomic: TGGCGAGGATA-TGAACACACAACACCTGGTTTTAGCTCAATTTGACAAGgtaatgactc ... ttgtaatcagGTGACGCGCACAAAGAGCAGGTGGAAGTGCAGTCTGAAAGACGGGATCATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttttctgcacgtgactctaatcatagtaagacatgtttggtgttgtaatcagGTGACGCGCACAAAGAGCAGGTGGAAGTGCAGTCTGAAAGACGGGATCATGCATATAAACGATAAGGACATTCTCTTCAACAAA
                 ctctaat  putative branch site (score: 3)
                    taatcata  TA-rich tract