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gtgtgtgaattagcttgttgggtagataaaggaagaagctttatatatgtaatggttgaattttttttttgttactttgcagAAACAGAAGGATGATATATTAGCTAGTCCTATTAAGAGTAGATCGAAGGCTCATGAAGTGATTAAGAACATGTTGGCTAGTTTGGGTGATCAATACACTC
species | Arabidopsis thaliana |
transcript | AT5G46390.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTCTAGATACTCGTAGCCATAGCTGGACTCCTGAAACTTGGCAG AAACAGAAGGATGATATATTAGCTAGTCCTATTAAGAGTAGATCGAAGGEST: gi|125109441|gb|EL161890.1|EL161890
genomic: TTTCTAGATACTCGTAGCCATAGCTGGACTCCTGAAACTTGGCAGgtgtgtgaat ... tactttgcagAAACAGAAGGATGATATATTAGCTAGTCCTATTAAGAGTAGATCGAAGG
EST: GCCTTTCTAGATACTCGTAGCCATAGCTGGACTCCTGAAACTTGGACAAG AAACAGAAGGAEST: gi|125244507|gb|EL258592.1|EL258592
genomic: GCCTTTCTAGATACTCGTAGCCATAGCTGGACTCCTGAAACTTGG-CA-Ggtgtgtgaat ... tactttgcagAAACAGAAGGA
EST: GTGCCTTTCTAGATACTCGTAGCCATAGCTGGACTCCTGAAACTTGGCAG AAACAGAAGGAEST: gi|116454597|gb|EG497189.1|EG497189
genomic: GTGCCTTTCTAGATACTCGTAGCCATAGCTGGACTCCTGAAACTTGGCAGgtgtgtgaat ... tactttgcagAAACAGAAGGA
EST: GTGCCTTTCTAGATACTCGTAGCCATAGCTGGACTCCTGAAACTTGGCAG AAACAGAAGGATGATATATTAGCTAGTCCTATTAAGAGTAGATCGAAGGCT
genomic: GTGCCTTTCTAGATACTCGTAGCCATAGCTGGACTCCTGAAACTTGGCAGgtgtgtgaat ... tactttgcagAAACAGAAGGATGATATATTAGCTAGTCCTATTAAGAGTAGATCGAAGGCT
aaaggaagaagctttatatatgtaatggttgaattttttttttgttactttgcagAAACAGAAGGATGATATATTAGCTAGTCCTATTAAGAGTAGATCGAAGGCTCATGAAGTGATTAAGAACATGTTGGCTAGTTTGGGTGATCAATACACTC
ttttttttttgttact CT-rich tract
tttatatatgtaatgg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtgaattagcttgttgggtagataaaggaagaagctttatatatgtaatggttgaattttttttttgttactttgcagAAACAGAAGGATGATATATTAGCTAGTCCTATTAAGAGTAGATCGAAGGCTCATGAAGTGATTAAGAACATGTTGGCTAGTTTGGGTGATCAATACACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC