1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtctgtctgttttctccagtatataatgtacgtagatgtggatcaatgtacaagtttgtttaactttatgcttcttattccggtgaaattggctatcgacagGGATACGCGCCGATCTGTTTGGGGCATGAGGATTTCTATATCAGGCGATTGTATCATCGGATTCAG
species | Arabidopsis thaliana |
transcript | AT5G23670.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGATTGGTGGTTCACTAGCAATCTCCAG GGATACGCGCCGATCTGTTTGGGGCATGAGGATTTCTATATCAGGCGATCGEST: gi|124716381|gb|EH807783.1|EH807783
genomic: TTGATTGGTGGTTCACTAGCAATCTCCAGgtctgtctgt ... ctatcgacagGGATACGCGCCGATCTGTTTGGGGCATGAGGATTTCTATATCAGGCGATTG
EST: GAGATTTCTTCCGTCGCTTCATTGATTGGTGGTTCACTAGCAATCTCCAG GGATACGCGCCGATCTGTTTGGGGCAEST: gi|116422598|gb|EG465190.1|EG465190
genomic: GAGATTTCTTCCGTCGCTTCATTGATTGGTGGTTCACTAGCAATCTCCAGgtctgtctgt ... ctatcgacagGGATACGCGCCGATCTGTTTGGGGCA
EST: GAGATTTCTTCCGTCGCTTCATTGATTGGTGGTTCACTAGCAATCTCCAG GGATACGCGCCGATCTGTTTGGGGCATGAGGATTTCTATATCAGGCGATTGEST: gi|116471346|gb|EG513938.1|EG513938
genomic: GAGATTTCTTCCGTCGCTTCATTGATTGGTGGTTCACTAGCAATCTCCAGgtctgtctgt ... ctatcgacagGGATACGCGCCGATCTGTTTGGGGCATGAGGATTTCTATATCAGGCGATTG
EST: GAGATTTCTTCCGTCGCTTCATTGATTGGTGGTTCACTAGCAATCTCCAG GGATACGCGCCGATCTGTTTGGGGCATGAGAATTTCTATATCAGGCGATTGEST: gi|116471526|gb|EG514118.1|EG514118
genomic: GAGATTTCTTCCGTCGCTTCATTGATTGGTGGTTCACTAGCAATCTCCAGgtctgtctgt ... ctatcgacagGGATACGCGCCGATCTGTTTGGGGCATGAGGATTTCTATATCAGGCGATTG
EST: GAGATTTCTTCCGTCGCTTCATTGATTGGTGGTTCACTAGCAATCTCCAG GGATACGCGCCGATCTGTTTGGGGCATGAGGATTTCTATATCAGGCGATTGEST: gi|116471371|gb|EG513963.1|EG513963
genomic: GAGATTTCTTCCGTCGCTTCATTGATTGGTGGTTCACTAGCAATCTCCAGgtctgtctgt ... ctatcgacagGGATACGCGCCGATCTGTTTGGGGCATGAGGATTTCTATATCAGGCGATTG
EST: GAGATTTCTTCCGTCGCTTCATTGATTGGTGGTTCACTAGCAATCTCCAG GGATACGCGCCGATCTGTTTGGGGCATGAGGATTTCTATATCAGGCGATTG
genomic: GAGATTTCTTCCGTCGCTTCATTGATTGGTGGTTCACTAGCAATCTCCAGgtctgtctgt ... ctatcgacagGGATACGCGCCGATCTGTTTGGGGCATGAGGATTTCTATATCAGGCGATTG
gtacaagtttgtttaactttatgcttcttattccggtgaaattggctatcgacagGGATACGCGCCGATCTGTTTGGGGCATGAGGATTTCTATATCAGGCGATTGTATCATCGGATTCAG
gtttaac putative branch site (score: 3)
tttgtttaactttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtctgttttctccagtatataatgtacgtagatgtggatcaatgtacaagtttgtttaactttatgcttcttattccggtgaaattggctatcgacagGGATACGCGCCGATCTGTTTGGGGCATGAGGATTTCTATATCAGGCGATTGTATCATCGGATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT