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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttttttgttctctctctctctctcattcattactataaatccagcttgtttagttgtttgattgtgaagattcttcgttttaaacttgatgtatcgcatattatcatccgatttagggatttgagtatttatgtctatgttttcttttcgtatgagtagTTACAGCTCGCGATCCAGATCCATATCCAGTCATGGCGGGTGTAGTAGCAAGAATTGTGGAAAAGTTTGGTAAACGTGATATTTGGTATCGAATATCGTT

Basic information

species Arabidopsis thaliana
transcript AT5G06190.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164172923|gb|ES044522.1|ES044522
EST:     AATCTACTTTTGAGTTCTCTGGAGCAGCTTTGGTCTTTTCTCCCTTCAG                         TTACAGCTCGCGATCCAGATCC
genomic: AATCTACTTTTGAGTTCTCTGGAGCAGCTTTGGTCTTTTCTCTCTTCAGgttttttttg ... gtatgagtagTTACAGCTCGCGATCCAGATCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catccgatttagggatttgagtatttatgtctatgttttcttttcgtatgagtagTTACAGCTCGCGATCCAGATCCATATCCAGTCATGGCGGGTGTAGTAGCAAGAATTGTGGAAAAGTTTGGTAAACGTGATATTTGGTATCGAATATCGTT
                                 tgttttcttttcgt  CT-rich tract
              atttgagtatttat  TA-rich tract