1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...agagtagattgtatcgctagatctagtgatttctatgattacgggaagataggaactagattcccaatttattgttgttttgggatgttgtgattcacagGGATACGCGGCGAGAGAGTTCTTCAACCAAGGTGTCAAGCCTGGTGAACTTGCTATCATTTCCAGGGAACAA
species | Arabidopsis thaliana |
transcript | AT5G03630.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAGAAGAAAAGAGCTTCAAGTATGTGATCGTCGGAGGTGGTGTCGCCGCC GGATACGCGGCGAGAGAGTTCTTCAACCAAGGTGTCAAGCCTGGTGAACTTEST: gi|124793704|gb|EH883383.1|EH883383
genomic: CAGAAGAAAAGAGCTTCAAGTATGTGATCGTCGGAGGTGGTGTCGCCGCCgtaagtctct ... tgattcacagGGATACGCGGCGAGAGAGTTCTTCAACCAAGGTGTCAAGCCTGGTGAACTT
EST: AAAAGAGCTTCAAGTATGTGATCGTCGGAGGTGGTGTCGCCGCC GGATACGCGGCGAGAGAGTTCTTCAACCAAGGTGTCAAGCCTGGTGAACTT
genomic: AAAAGAGCTTCAAGTATGTGATCGTCGGAGGTGGTGTCGCCGCCgtaagtctct ... tgattcacagGGATACGCGGCGAGAGAGTTCTTCAACCAAGGTGTCAAGCCTGGTGAACTT
aagataggaactagattcccaatttattgttgttttgggatgttgtgattcacagGGATACGCGGCGAGAGAGTTCTTCAACCAAGGTGTCAAGCCTGGTGAACTTGCTATCATTTCCAGGGAACAA
aatttattgttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agagtagattgtatcgctagatctagtgatttctatgattacgggaagataggaactagattcccaatttattgttgttttgggatgttgtgattcacagGGATACGCGGCGAGAGAGTTCTTCAACCAAGGTGTCAAGCCTGGTGAACTTGCTATCATTTCCAGGGAACAA
- - - - - - - - - - - - - - - - - - - - - - gaagata
- - - - - - - - - - - - - - - - - - - - - - - - - - -aactaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcccaa