1 5' 3' | 2 5' 3' | 3 5' 3' |
gtataactaactaactaactaactaaaccaattcgaaattctgaattctcacatccttttgtttggttgcaaaaatcagGGAGGTGAGATCTCAATGTTGGAAATGTTTGGTACATTTGCTCTCTCTGTTGGTGCTGCT
species | Arabidopsis thaliana |
transcript | AT4G25700.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTCTATGGCTGTTATGGCTGTTTACTACAGATTCTCTTGGCAAATGGAG GGAGGTGAGATCTCAATGTTGGAAATGTTTGGTACATTTGCTCTCTCTGTTEST: gi|125204949|gb|EL219903.1|EL219903
genomic: CTTCTATGGCTGTTATGGCTGTTTACTACAGATTCTCTTGGCAAATGGAGgtataactaa ... caaaaatcagGGAGGTGAGATCTCAATGTTGGAAATGTTTGGTACATTTGCTCTCTCTGTT
EST: CTTCTATGGCTGTTATGGCTGTTTACTACAGATTCTCTTGGCAAATGGAG GGAGGTGAGATCTCAATGTTGGAAATGTTTGGTACATEST: gi|124845524|gb|EH929961.1|EH929961
genomic: CTTCTATGGCTGTTATGGCTGTTTACTACAGATTCTCTTGGCAAATGGAGgtataactaa ... caaaaatcagGGAGGTGAGATCTCAATGTTGGAAATGTTTGGTACAT
EST: CTTCTATGGCTGTTATGGCTGTTTACTACAGATTCTCTTGGCAAATGGAG GGAGGTGAGATCTCAATGTTGGAAATGTTTGGTACATTTGCTEST: gi|125226963|gb|EL241048.1|EL241048
genomic: CTTCTATGGCTGTTATGGCTGTTTACTACAGATTCTCTTGGCAAATGGAGgtataactaa ... caaaaatcagGGAGGTGAGATCTCAATGTTGGAAATGTTTGGTACATTTGCT
EST: ACTACAGATTCTCTTGGCAAATGGAG GGAGGTGAGATCTCAATGTTGGAAATGTTTGGTACATTTGCT
genomic: ACTACAGATTCTCTTGGCAAATGGAGgtataactaa ... caaaaatcagGGAGGTGAGATCTCAATGTTGGAAATGTTTGGTACATTTGCT
aaaccaattcgaaattctgaattctcacatccttttgtttggttgcaaaaatcagGGAGGTGAGATCTCAATGTTGGAAATGTTTGGTACATTTGCTCTCTCTGTTGGTGCTGCT
ttctcac putative branch site (score: 2)
ttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataactaactaactaactaactaaaccaattcgaaattctgaattctcacatccttttgtttggttgcaaaaatcagGGAGGTGAGATCTCAATGTTGGAAATGTTTGGTACATTTGCTCTCTCTGTTGGTGCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT