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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcaatgtcagaagttgtgtaactattaggttgcataagtaaggtatcaactttagatttgctatgaagttctcaattacagtctttttgtcttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCATCAACAAGGCTGAGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCT

Basic information

species Arabidopsis thaliana
transcript AT4G22890.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124992913|gb|EL065182.1|EL065182
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTT
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTT
EST: gi|86028451|gb|DR324204.1|DR324204
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
EST: gi|86028467|gb|DR324220.1|DR324220
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATAGCAATGTYTTGCCCTATTGTAGCA
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
EST: gi|86028448|gb|DR324201.1|DR324201
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
EST: gi|163992898|gb|ES148481.1|ES148481
EST:     AGAAGAAGAGTCTTCTTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTA
genomic: AGAAGAAGAGTCTTC-TTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTA
EST: gi|86028482|gb|DR324235.1|DR324235
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
EST: gi|86028462|gb|DR324215.1|DR324215
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
EST: gi|86028474|gb|DR324227.1|DR324227
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
EST: gi|163975250|gb|ES111732.1|ES111732
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTA
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTA
EST: gi|164218460|gb|ES062590.1|ES062590
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTT
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTT
EST: gi|86028454|gb|DR324207.1|DR324207
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
EST: gi|125058744|gb|EL127421.1|EL127421
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACG
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACG
EST: gi|116431831|gb|EG474423.1|EG474423
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
EST: gi|86028457|gb|DR324210.1|DR324210
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGRTTAGCAATGTTTTGCCCTATTGTAGC
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGAT-AGCAATGTTTTGCCCTATTGTAGC
EST: gi|124974072|gb|EL047656.1|EL047656
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATAGCAA
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAA
EST: gi|86028453|gb|DR324206.1|DR324206
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATTAGCAATGTTTTGCCCTATTGTAGC
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGAT-AGCAATGTTTTGCCCTATTGTAGC
EST: gi|86028472|gb|DR324225.1|DR324225
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
EST: gi|86028476|gb|DR324229.1|DR324229
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTMTTGTAGCA
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
EST: gi|86028478|gb|DR324231.1|DR324231
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
EST: gi|86028456|gb|DR324209.1|DR324209
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGC-A--A-                         -T-CAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
EST: gi|86028477|gb|DR324230.1|DR324230
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
EST: gi|86028464|gb|DR324217.1|DR324217
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
EST: gi|86028473|gb|DR324226.1|DR324226
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
EST: gi|86028465|gb|DR324218.1|DR324218
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
EST: gi|86028466|gb|DR324219.1|DR324219
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
EST: gi|116431832|gb|EG474424.1|EG474424
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
EST: gi|86028455|gb|DR324208.1|DR324208
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGRTAGCAATGTTTTGCCCTATTGTAGCA
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
EST: gi|124750838|gb|EH840968.1|EH840968
EST:     CCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
genomic: CCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
EST: gi|86072245|gb|DR368002.1|DR368002
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGC-A--A-                         -T-C---AGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
EST: gi|86028461|gb|DR324214.1|DR324214
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
EST: gi|86028445|gb|DR324198.1|DR324198
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
EST: gi|86028468|gb|DR324221.1|DR324221
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
EST: gi|86028444|gb|DR324197.1|DR324197
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATTAGCAATGTTTTGCCCTATTGTAGC
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGAT-AGCAATGTTTTGCCCTATTGTAGC
EST: gi|86028447|gb|DR324200.1|DR324200
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATTAGCAATGTTTTGCCCTATTGTAGC
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGA-TAGCAATGTTTTGCCCTATTGTAGC
EST: gi|125198785|gb|EL213739.1|EL213739
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTG
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTG
EST: gi|125034991|gb|EL107260.1|EL107260
EST:     AGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTT-GCCCTATTGTAGCA
genomic: AGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
EST: gi|125102310|gb|EL157113.1|EL157113
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATAGCAATGTT
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTT
EST: gi|86028475|gb|DR324228.1|DR324228
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACCTCGATAGCAATGTTTTGCCCTATTGTAGCA
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
EST: gi|86028470|gb|DR324223.1|DR324223
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGRGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
EST: gi|86028458|gb|DR324211.1|DR324211
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
EST: gi|86028460|gb|DR324213.1|DR324213
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
EST: gi|86028452|gb|DR324205.1|DR324205
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
EST: gi|86028459|gb|DR324212.1|DR324212
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCNTTAGCAATGTTTTGCCCTATTGTAGCA
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
EST: gi|86028469|gb|DR324222.1|DR324222
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
EST: gi|86028479|gb|DR324232.1|DR324232
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATTAGCAATGTTTTGCCCTATTGTAGC
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGA-TAGCAATGTTTTGCCCTATTGTAGC
EST: gi|86028483|gb|DR324236.1|DR324236
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATTAGCAATGTTTTGCCCTATTGTAGC
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGAT-AGCAATGTTTTGCCCTATTGTAGC
EST: gi|86028480|gb|DR324233.1|DR324233
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
EST: gi|116424112|gb|EG466704.1|EG466704
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCA
EST: gi|125232912|gb|EL246997.1|EL246997
EST:     GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAG                         GTCCAGTAGGAGGAGACAACGTCGA
genomic: GAGAAGAAGAGTCTTCTTGTTGCCTGCTAAAGCCACAACAGAGCAATCAGgtcttgattt ... cttccttaagGTCCAGTAGGAGGAGACAACGTCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaactttagatttgctatgaagttctcaattacagtctttttgtcttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCATCAACAAGGCTGAGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCT
                                    tctttttgtcttcctt  CT-rich tract
     tttagattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcaatgtcagaagttgtgtaactattaggttgcataagtaaggtatcaactttagatttgctatgaagttctcaattacagtctttttgtcttccttaagGTCCAGTAGGAGGAGACAACGTCGATAGCAATGTTTTGCCCTATTGTAGCATCAACAAGGCTGAGAAGAAAACAATTGGTGAAATGGAACAAGAGTTTCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA