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gttaactttgtgctcatcttctcgtactcgattcatggagaggtgttctagggtttttcttagggtttgtgattgtttatcgtttgctgatgatttttggtatatgtttctctttgatagGTTTGTGAGCAGATTGTGATAGAGTATGTTCCAGAGCAAGCTGAATTTGAAGATGGTTTTAACGATGAGTTTAAGGAAATCTTCGAGAAGTTCAACTTCC
species | Arabidopsis thaliana |
transcript | AT4G21660.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACGTTTCTGCTGCTTCTGAATCCAAAGAGAATACAGATCCCCAGCCACAG GTTTGTGAGCAGATTGTGATAGAGTATGTTCCAGAGCAAGCTGAATTTGAAEST: gi|86070989|gb|DR366746.1|DR366746
genomic: ACGTTTCTGCTGCTTCTGAATCCAAAGAGAATACAGATCCCCAGCCACAGgttaactttg ... tctttgatagGTTTGTGAGCAGATTGTGATAGAGTATGTTCCAGAGCAAGCTGAATTTGAA
EST: ACGTTTCTGCTGCTTCTGAATCCAAAGAGAATACAGATCCCCAGCCACAG GTTTGTGAGCAGATTGTGATAGAGTATGTTCCAGAGCAAGCTGAATTTGAA
genomic: ACGTTTCTGCTGCTTCTGAATCCAAAGAGAATACAGATCCCCAGCCACAGgttaactttg ... tctttgatagGTTTGTGAGCAGATTGTGATAGAGTATGTTCCAGAGCAAGCTGAATTTGAA
tttgtgattgtttatcgtttgctgatgatttttggtatatgtttctctttgatagGTTTGTGAGCAGATTGTGATAGAGTATGTTCCAGAGCAAGCTGAATTTGAAGATGGTTTTAACGATGAGTTTAAGGAAATCTTCGAGAAGTTCAACTTCC
tgctgat putative branch site (score: 3)
tgtttctcttt putative PPT
attgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaactttgtgctcatcttctcgtactcgattcatggagaggtgttctagggtttttcttagggtttgtgattgtttatcgtttgctgatgatttttggtatatgtttctctttgatagGTTTGTGAGCAGATTGTGATAGAGTATGTTCCAGAGCAAGCTGAATTTGAAGATGGTTTTAACGATGAGTTTAAGGAAATCTTCGAGAAGTTCAACTTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT