1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgataatactctaattattgtttattttgtgttggatcaaatggatgataagaacttgttgatctacttctaaacctcttaattttggagactatgataagagtaaaggacatagtatgtttgaatactgatactgtagtctgtagTGTTGCTGACAAAAACGTATAGGTATATGTACATTTGTTTTCGCTGAGGCTAAAGATGGATAAGCTTCTTGAGAATCATCAGTTTGCGACACATGCCATC
species | Arabidopsis thaliana |
transcript | AT4G15010.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGTTTCTGTTTACTTAATATCCTGTGAGAGAAAATTCTTCTTGACTTGAG TGTTGCTGACAAAAACGTATAGGTATATGTACATTTGTTTTCGCTGAGGCTEST: gi|116399032|gb|EG441624.1|EG441624
genomic: GGTTTCTGTTTACTTAATATCCTGTGAGAGAAAACTCTTCTTGACTTGAGgtatgataat ... tagtctgtagTGTTGCTGACAAAAACGTATAGGTATATGTACATTTGTTTTCGCTGAGGCT
EST: GGTTTCTGTTTACTTAATATCCTGTGAGAGAAAACTCTTCTTGACTTGAG TGTTGCTGACAAAAACGTATAGGTATATGTACATTTGTTTTCGCTGAGGCTEST: gi|116399034|gb|EG441626.1|EG441626
genomic: GGTTTCTGTTTACTTAATATCCTGTGAGAGAAAACTCTTCTTGACTTGAGgtatgataat ... tagtctgtagTGTTGCTGACAAAAACGTATAGGTATATGTACATTTGTTTTCGCTGAGGCT
EST: GGTTTCTGTTTACTTAATATCCTGTGAGAGAAAACTCTTCTTGACTTGAG TGTTGCTGACAAAAACGTATAGGTATATGTACATTTGTTTTCGCTGAGGCTEST: gi|86070446|gb|DR366203.1|DR366203
genomic: GGTTTCTGTTTACTTAATATCCTGTGAGAGAAAACTCTTCTTGACTTGAGgtatgataat ... tagtctgtagTGTTGCTGACAAAAACGTATAGGTATATGTACATTTGTTTTCGCTGAGGCT
EST: GGTTTCTGTTTACTTAATATCCTGTGAGAGAAAATTCTTCTTGACTTGAG TGTTGCTGACAAAAACGTATAGGTATATGTACATTTGTTTTCGCTGAGGCT
genomic: GGTTTCTGTTTACTTAATATCCTGTGAGAGAAAACTCTTCTTGACTTGAGgtatgataat ... tagtctgtagTGTTGCTGACAAAAACGTATAGGTATATGTACATTTGTTTTCGCTGAGGCT
ctatgataagagtaaaggacatagtatgtttgaatactgatactgtagtctgtagTGTTGCTGACAAAAACGTATAGGTATATGTACATTTGTTTTCGCTGAGGCTAAAGATGGATAAGCTTCTTGAGAATCATCAGTTTGCGACACATGCCATC
tactgat putative branch site (score: 2)
tttgaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgataatactctaattattgtttattttgtgttggatcaaatggatgataagaacttgttgatctacttctaaacctcttaattttggagactatgataagagtaaaggacatagtatgtttgaatactgatactgtagtctgtagTGTTGCTGACAAAAACGTATAGGTATATGTACATTTGTTTTCGCTGAGGCTAAAGATGGATAAGCTTCTTGAGAATCATCAGTTTGCGACACATGCCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA