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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagatctcaaacacactctttcatattcagatttcatgatcaataagttcattagtccactgagtctaagtccattcctgttgttttcagGTGAAAATGCCAAGAGGGTATTTGATTAACAGAAAGAGAAGCTTATGGTGATTTGTTGTATAATTGTTTGGTCTCTCAATAGATGTCAAAAAGAGTGAGA

Basic information

species Arabidopsis thaliana
transcript AT3G45830.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86073058|gb|DR368815.1|DR368815
EST:     GAACTCAGTGAATGATGATTTCGATGATGAAACATGATTGGTGATACCAG                         GTGAAAATGCCAAGAGGGTATTTGATTAACAGAAAGAGAAGCTTATGGTGA
genomic: GAACTCAGTGAATGATGATTTCGATGATGAAACATGATTGGTGATACCAGgtagatctca ... ttgttttcagGTGAAAATGCCAAGAGGGTATTTGATTAACAGAAAGAGAAGCTTATGGTGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgatcaataagttcattagtccactgagtctaagtccattcctgttgttttcagGTGAAAATGCCAAGAGGGTATTTGATTAACAGAAAGAGAAGCTTATGGTGATTTGTTGTATAATTGTTTGGTCTCTCAATAGATGTCAAAAAGAGTGAGA
                                       ttcctgttgttttc  CT-rich tract
      aataagtt  TA-rich tract