1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagatacatccttcaatcatattgatattctggatctgtcttattgaatgaatttgaatcatatcattcagttcaggattcctactggggttttattgattggtttgatggttttttgcagAGAGTAAGAGTAAGAGGGTGACCTTGAAGCAGAAGCATAAGGTCCTGAAAAAGGTGAAGGAGCACCACAAGAAGAAGGCAAAGGATGCTAAAAAGCTTGG
species | Arabidopsis thaliana |
transcript | AT3G07050.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTGCGTCGCTCTCATCCCAGGGCGAGAAAGATGGTGAAACGGAGTAAAA AGAGTAAGAGTAAGAGGGTGACCTTGAAGCAGAAGCATAAGGTCCTGAAAAEST: gi|86070931|gb|DR366688.1|DR366688
genomic: TTTGCGTCGCTCTCATCCCAGGGCGAGAAAGATGGTGAAACGGAGTAAAAgtaagataca ... ttttttgcagAGAGTAAGAGTAAGAGGGTGACCTTGAAGCAGAAGCATAAGGTCCTGAAAA
EST: TTTGCGTCGCTCTCATCCCAGGGCGAGAAAGATGGTGAAACGGAGTAAAA AGAGTAAGAGTAAGAGGGTGACCTTGAAGCAGAAGCATAAGGTCCTGAAAAEST: gi|86070932|gb|DR366689.1|DR366689
genomic: TTTGCGTCGCTCTCATCCCAGGGCGAGAAAGATGGTGAAACGGAGTAAAAgtaagataca ... ttttttgcagAGAGTAAGAGTAAGAGGGTGACCTTGAAGCAGAAGCATAAGGTCCTGAAAA
EST: TTTGCGTCGCTCTCATCCCAGGGCGAGAAAGATGGTGAAACGGAGTAAAA AGAGTAAGAGTAAGAGGGTGACCTTGAAGCAGAAGCATAAGGTCCTGAAAAEST: gi|124854928|gb|EH939365.1|EH939365
genomic: TTTGCGTCGCTCTCATCCCAGGGCGAGAAAGATGGTGAAACGGAGTAAAAgtaagataca ... ttttttgcagAGAGTAAGAGTAAGAGGGTGACCTTGAAGCAGAAGCATAAGGTCCTGAAAA
EST: TTTGCGTCGCTCTCATCCCAGGGCGAGAAAGATGGTGAAACGGAGTAAAA AGAGTAAGAGTAAGAGGGTEST: gi|86070933|gb|DR366690.1|DR366690
genomic: TTTGCGTCGCTCTCATCCCAGGGCGAGAAAGATGGTGAAACGGAGTAAAAgtaagataca ... ttttttgcagAGAGTAAGAGTAAGAGGGT
EST: TTTGCGTCGCTCTCATCCCAGGGCGAGAAAGATGGTGAAACGGAGTAAAA AGAGTAAGAGTAAGAGGGTGACCTTGAAGCAGAAGCATAAGGTCCTGAAAA
genomic: TTTGCGTCGCTCTCATCCCAGGGCGAGAAAGATGGTGAAACGGAGTAAAAgtaagataca ... ttttttgcagAGAGTAAGAGTAAGAGGGTGACCTTGAAGCAGAAGCATAAGGTCCTGAAAA
ttcagttcaggattcctactggggttttattgattggtttgatggttttttgcagAGAGTAAGAGTAAGAGGGTGACCTTGAAGCAGAAGCATAAGGTCCTGAAAAAGGTGAAGGAGCACCACAAGAAGAAGGCAAAGGATGCTAAAAAGCTTGG
ttttttgc CT-rich tract
ttttattgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatacatccttcaatcatattgatattctggatctgtcttattgaatgaatttgaatcatatcattcagttcaggattcctactggggttttattgattggtttgatggttttttgcagAGAGTAAGAGTAAGAGGGTGACCTTGAAGCAGAAGCATAAGGTCCTGAAAAAGGTGAAGGAGCACCACAAGAAGAAGGCAAAGGATGCTAAAAAGCTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG