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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttgtttttgctatttacgtttacagattcgtaatcctatcctggattgagaaatgcgtagtttgatgattcttcgctcgcctctttgttgactgcagTTTTACTGTCAGGTAGAAGAATCCATGTCGATTTACGTCGCGTCGCGACGGCTCTCCGGCGGAACAACTGTGACGGCGCTGCGTTATGCCACCTCTCTGA

Basic information

species Arabidopsis thaliana
transcript AT2G47510.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116457541|gb|EG500133.1|EG500133
EST:     TGCAACTTGATCCGTCGTCTTCTCTCAGCTCTCCATCTCCGTCTTCCAAG                         TTTTACTGTCAGGTAGAAGAATCCATGTCGATTTACGTCGCGTCGCGACGG
genomic: TGCAACTTGATCCGTCGTCTTCTCTCAGCTCTCCATCTCCGTCTTCCAAGgtttttgttt ... ttgactgcagTTTTACTGTCAGGTAGAAGAATCCATGTCGATTTACGTCGCGTCGCGACGG
EST: gi|86055161|gb|DR350918.1|DR350918
EST:     TGCAA-TTGATCCGTCGTCTTCTCTCAGCTCTCCATCTCCGTCTTCCAAG                         TTTTACTGTCAGGTAGAAGAATCCATGTCGATTTA
genomic: TGCAACTTGATCCGTCGTCTTCTCTCAGCTCTCCATCTCCGTCTTCCAAGgtttttgttt ... ttgactgcagTTTTACTGTCAGGTAGAAGAATCCATGTCGATTTA
EST: gi|164066245|gb|ES155675.1|ES155675
EST:     TGCAACTTGATCCGTCGTCTTCTCTCAGCTCTCCATCTCCGTCTTCCAAG                         TTTTACNGTCAGG
genomic: TGCAACTTGATCCGTCGTCTTCTCTCAGCTCTCCATCTCCGTCTTCCAAGgtttttgttt ... ttgactgcagTTTTACTGTCAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggattgagaaatgcgtagtttgatgattcttcgctcgcctctttgttgactgcagTTTTACTGTCAGGTAGAAGAATCCATGTCGATTTACGTCGCGTCGCGACGGCTCTCCGGCGGAACAACTGTGACGGCGCTGCGTTATGCCACCTCTCTGA
                                           tgttgac  putative branch site (score: 3)
                          ttcttcgctcgcctct  CT-rich tract