1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gatttgtagtcattgatgttttaaaattaaactttggtgtatcttgtaacgtatatacatgtacataatatatggtactaaatcgtgatttttattacagCCTTGGATATTTGGACTTAGCTTGCTAGGACTGACACCTTTGGCTGAGCGAGTCAGCTTTTTGACAGA
species | Arabidopsis thaliana |
transcript | AT2G38170.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCCGGCCATTCCTGCCGCCATTATTTGCACCTATTGTGGCGTCAGTCAG CCTTGGATATTTGGACTTAGCTTGCTAGGACTGACACCTTTGGCTGAGCGAEST: gi|124761603|gb|EH851733.1|EH851733
genomic: TTCCGGCCATTCCTGCCGCCATTATTTGCACCTATTGTGGCGTCAGTCAGgtacacatat ... tttattacagCCTTGGATATTTGGACTTAGCTTGCTAGGACTGACACCTTTGGCTGAGCGA
EST: TTCCTGCCGCCATTATTTGCACCTATTGTGGCGTCAGTCAG CCTTGGATATTTGGACTTAGCTTGCTAGGACTGACACCTTTGEST: gi|125227667|gb|EL241752.1|EL241752
genomic: TTCCTGCCGCCATTATTTGCACCTATTGTGGCGTCAGTCAGgtacacatat ... tttattacagCCTTGGATATTTGGACTTAGCTTGCTAGGACTGACACCTTTG
EST: TTGTGGCGTCAGTCAG CCTTGGATATTTGGACTTAGCTTGCTAGGACTGACACCTTTGGCTGAGCGAEST: gi|125244175|gb|EL258260.1|EL258260
genomic: TTGTGGCGTCAGTCAGgtacacatat ... tttattacagCCTTGGATATTTGGACTTAGCTTGCTAGGACTGACACCTTTGGCTGAGCGA
EST: TTCCGGCCATTCCTGCCGCCATTATTTGCACCTATTGTGGCGTCAGTCAG CCTTGGATATTTGGACTTAGCTTGCTAGGA
genomic: TTCCGGCCATTCCTGCCGCCATTATTTGCACCTATTGTGGCGTCAGTCAGgtacacatat ... tttattacagCCTTGGATATTTGGACTTAGCTTGCTAGGA
gtaacgtatatacatgtacataatatatggtactaaatcgtgatttttattacagCCTTGGATATTTGGACTTAGCTTGCTAGGACTGACACCTTTGGCTGAGCGAGTCAGCTTTTTGACAGA
tactaaa putative branch site (score: 1)
tttttatt putative PPT
tatatacatgtacata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatttgtagtcattgatgttttaaaattaaactttggtgtatcttgtaacgtatatacatgtacataatatatggtactaaatcgtgatttttattacagCCTTGGATATTTGGACTTAGCTTGCTAGGACTGACACCTTTGGCTGAGCGAGTCAGCTTTTTGACAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT