1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaactcttaacgccgagcatacatacgtttctcaaagacataaagctgattgtgtttctccatttgctgaaagatctgagccataaagctgaaatagaaaccttttttgtgttttgttgttccccagATTCTCTGACGCTGCTTAAACCTTAAAGTTCGTAGCTTTTTCTTGCTAGTGGGTCTTTTGAGGTGGATCTGGATTCTGG
species | Arabidopsis thaliana |
transcript | AT2G34200.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCCAGCTGAGATTTTTAGATATTTTGCAG ATTCTCTGACGCTGCTTAAACCTTAAAGTTCGTAGCTTTTTCTTGCTAGTGEST: gi|164076957|gb|ES182386.1|ES182386
genomic: GCCAGCTGAGATTTTTAGATATTTTGCAGgtaactctta ... tgttccccagATTCTCTGACGCTGCTTAAACCTTAAAGTTCGTAGCTTTTTCTTGCTAGTG
EST: TTTTAGATATTTTGCAG ATTCTCTGACGCTGCTTAAACCTTAAAGTTCGTAGCTTTTTCTTGCTAGTGEST: gi|116391853|gb|EG434445.1|EG434445
genomic: TTTTAGATATTTTGCAGgtaactctta ... tgttccccagATTCTCTGACGCTGCTTAAACCTTAAAGTTCGTAGCTTTTTCTTGCTAGTG
EST: AAAAGGAAATTGCAATCGAGAGCCAGCTGAGATTTTTAGATATTTTGCAG ATTCTCTGACGCTGCTTAAACCTTAAAGTTCGTAGCTTTTTCTTGCTAGTG
genomic: AAAAGGAAATTGCAATCGAGAGCCAGCTGAGATTTTTAGATATTTTGCAGgtaactctta ... tgttccccagATTCTCTGACGCTGCTTAAACCTTAAAGTTCGTAGCTTTTTCTTGCTAGTG
gatctgagccataaagctgaaatagaaaccttttttgtgttttgttgttccccagATTCTCTGACGCTGCTTAAACCTTAAAGTTCGTAGCTTTTTCTTGCTAGTGGGTCTTTTGAGGTGGATCTGGATTCTGG
ttttgttgttcccc CT-rich tract
aaatagaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactcttaacgccgagcatacatacgtttctcaaagacataaagctgattgtgtttctccatttgctgaaagatctgagccataaagctgaaatagaaaccttttttgtgttttgttgttccccagATTCTCTGACGCTGCTTAAACCTTAAAGTTCGTAGCTTTTTCTTGCTAGTGGGTCTTTTGAGGTGGATCTGGATTCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA