1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atattacatggtcatatatgcatatggctacatgtttgagttatattcgattatctggtgaaagatgagattgtgagtttgtaagtttttgacagtgtagAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGACCAGGGAGACACCATCTGTTTGTACCAGGACCAGTGAACATACCGGAACCGGTA
species | Arabidopsis thaliana |
transcript | AT2G13360.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054085|gb|DR349842.1|DR349842
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054063|gb|DR349820.1|DR349820
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054092|gb|DR349849.1|DR349849
genomic: AGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: CCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054099|gb|DR349856.1|DR349856
genomic: CCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054116|gb|DR349873.1|DR349873
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054133|gb|DR349890.1|DR349890
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054094|gb|DR349851.1|DR349851
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054061|gb|DR349818.1|DR349818
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: CCAAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054072|gb|DR349829.1|DR349829
genomic: CCAAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054148|gb|DR349905.1|DR349905
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: CAAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054117|gb|DR349874.1|DR349874
genomic: CAAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054127|gb|DR349884.1|DR349884
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054060|gb|DR349817.1|DR349817
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: CCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054138|gb|DR349895.1|DR349895
genomic: CCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054089|gb|DR349846.1|DR349846
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCATAGTTTAG AGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGACCAGEST: gi|86054114|gb|DR349871.1|DR349871
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--AG---AGgttaaacttc ... gacagtgtagAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGACCAG
EST: CCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054058|gb|DR349815.1|DR349815
genomic: CCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054135|gb|DR349892.1|DR349892
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054115|gb|DR349872.1|DR349872
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054112|gb|DR349869.1|DR349869
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054145|gb|DR349902.1|DR349902
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: CCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054098|gb|DR349855.1|DR349855
genomic: CCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054076|gb|DR349833.1|DR349833
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054093|gb|DR349850.1|DR349850
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054126|gb|DR349883.1|DR349883
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054064|gb|DR349821.1|DR349821
genomic: AAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: CTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054142|gb|DR349899.1|DR349899
genomic: CTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054097|gb|DR349854.1|DR349854
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054084|gb|DR349841.1|DR349841
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054137|gb|DR349894.1|DR349894
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054129|gb|DR349886.1|DR349886
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: CTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054070|gb|DR349827.1|DR349827
genomic: CTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054119|gb|DR349876.1|DR349876
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054059|gb|DR349816.1|DR349816
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: CCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054066|gb|DR349823.1|DR349823
genomic: CCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: CTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054106|gb|DR349863.1|DR349863
genomic: CTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: CCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054149|gb|DR349906.1|DR349906
genomic: CCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054083|gb|DR349840.1|DR349840
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: CAAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054081|gb|DR349838.1|DR349838
genomic: CAAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054065|gb|DR349822.1|DR349822
genomic: AGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054068|gb|DR349825.1|DR349825
genomic: AGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: TCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054144|gb|DR349901.1|DR349901
genomic: TCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: CCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054080|gb|DR349837.1|DR349837
genomic: CCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054090|gb|DR349847.1|DR349847
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054074|gb|DR349831.1|DR349831
genomic: AAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054151|gb|DR349908.1|DR349908
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054121|gb|DR349878.1|DR349878
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054141|gb|DR349898.1|DR349898
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054108|gb|DR349865.1|DR349865
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054146|gb|DR349903.1|DR349903
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054139|gb|DR349896.1|DR349896
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCGCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054100|gb|DR349857.1|DR349857
genomic: AAAACCTC-CCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054154|gb|DR349911.1|DR349911
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054062|gb|DR349819.1|DR349819
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054071|gb|DR349828.1|DR349828
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: CCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054134|gb|DR349891.1|DR349891
genomic: CCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: GTCCAAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054082|gb|DR349839.1|DR349839
genomic: GTCCAAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054079|gb|DR349836.1|DR349836
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: CCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054104|gb|DR349861.1|DR349861
genomic: CCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCCCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054086|gb|DR349843.1|DR349843
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054153|gb|DR349910.1|DR349910
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|124758806|gb|EH848936.1|EH848936
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: CTTCCGCCTTATTCAGAG AGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGACCAGGEST: gi|86054091|gb|DR349848.1|DR349848
genomic: CTTCCGCCTTATTCAGAGgttaaacttc ... gacagtgtagAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGACCAGG
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054107|gb|DR349864.1|DR349864
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: CCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054088|gb|DR349845.1|DR349845
genomic: CCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAGEST: gi|86054130|gb|DR349887.1|DR349887
genomic: AACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
EST: AAAACCTCCCTCAGGAGCTTCCGCCTTATTCAGAGTGTAG
genomic: AAAACCTCCCTCAGGAGCTTCCGCCTTATTC--A--G-AGgttaaacttc ... gacagt
ttcgattatctggtgaaagatgagattgtgagtttgtaagtttttgacagtgtagAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGACCAGGGAGACACCATCTGTTTGTACCAGGACCAGTGAACATACCGGAACCGGTA
ttttgac putative branch site (score: 3)
taagttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atattacatggtcatatatgcatatggctacatgtttgagttatattcgattatctggtgaaagatgagattgtgagtttgtaagtttttgacagtgtagAGGAGGATCCAAAAGAAAAGAGGAAAAAATGGACTATATGTATGGACCAGGGAGACACCATCTGTTTGTACCAGGACCAGTGAACATACCGGAACCGGTA
- - - - - - - - - - - - - - - - tgtttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtttgt