1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aagagagacattgatttgaatatttttacttaggtgcattgattctgcagattgtgttaatgtgtgtcactcttaatcttctgtcttatgtttttctcagTTGATAAGGAATTTGAAGAAGCCTTTGTTTAATGGAAAGCAAAGGAAGAATCCATCCATCTCATCATCATATGAGGCGTCCTCTTCCAGGTCCCGGTGGC
species | Arabidopsis thaliana |
transcript | AT1G67170.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTATCCCAACACTCGATCAAATAATCCCAGTGAGCTTCTTCCATTCCAAG TTGATAAGGAATTTGAAGAAGCCTTTGTTTAATGGAAAGCAAAGGAAGAAT
genomic: CTATCCCAACACTCGATCAAATAATCCCAGTGAGCTTCTTCCATTCCAAGgtacgaatcg ... tttttctcagTTGATAAGGAATTTGAAGAAGCCTTTGTTTAATGGAAAGCAAAGGAAGAAT
tgcagattgtgttaatgtgtgtcactcttaatcttctgtcttatgtttttctcagTTGATAAGGAATTTGAAGAAGCCTTTGTTTAATGGAAAGCAAAGGAAGAATCCATCCATCTCATCATCATATGAGGCGTCCTCTTCCAGGTCCCGGTGGC
tcttaat putative branch site (score: 3)
tcttctgtcttatgtt CT-rich tract
ttatgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagagagacattgatttgaatatttttacttaggtgcattgattctgcagattgtgttaatgtgtgtcactcttaatcttctgtcttatgtttttctcagTTGATAAGGAATTTGAAGAAGCCTTTGTTTAATGGAAAGCAAAGGAAGAATCCATCCATCTCATCATCATATGAGGCGTCCTCTTCCAGGTCCCGGTGGC
- -agagaca
- - - - - - gatttga