Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86082299|gb|DR378058.1|DR378058EST: CTCCGACACGTATCACAGGTCGCCTTCCTGTTTCTCCCGTCTGCTGCCAG CCTTTCAAGGTGTTACACGGTGGTGTATCTGCTTTGATAGCCGAGTCTTTA
genomic: CTCCGACACGTATCACAGGTCGCCTTCCTGTTTCTCCCGTCTGCTGCCAGgtttcattct ... tttcaaaaagCCTTTCAAGGTGTTACACGGTGGTGTATCTGCTTTGATAGCCGAGTCTTTA
EST:
gi|19877781|gb|AU238612.1|AU238612EST: CTCCGACACGTATCACAGGTCGCCTTCCTGTTTCTCCCGTCTGCTGCCAG CCTTTCAAGGTGTTACACGGTGGTGTATCTGCTTTGATAGCCGAGTCTTTA
genomic: CTCCGACACGTATCACAGGTCGCCTTCCTGTTTCTCCCGTCTGCTGCCAGgtttcattct ... tttcaaaaagCCTTTCAAGGTGTTACACGGTGGTGTATCTGCTTTGATAGCCGAGTCTTTA
EST:
gi|301501617|gb|HO207157.1|HO207157EST: CTCCGACACGTATCACAGGTCGCCTTCCTGTTTCTCCCGTCTGCTGCCAG CCTTTCAAGGTGTTACACGGTGGTGTATCTGCTTTGATAGCCGAGTCTTTA
genomic: CTCCGACACGTATCACAGGTCGCCTTCCTGTTTCTCCCGTCTGCTGCCAGgtttcattct ... tttcaaaaagCCTTTCAAGGTGTTACACGGTGGTGTATCTGCTTTGATAGCCGAGTCTTTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gccctttgttctaaccccaaattctgataaagattttcaatttcctttcaaaaagCCTTTCAAGGTGTTACACGGTGGTGTATCTGCTTTGATAGCCGAGTCTTTAGCAAGTATGGGAGCTCACATGGCTTCTGGTTTCAAAAGGGTCGCTGGAA
ttttcaatttcctttc CT-rich tract
ataaagattttcaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttcattcttcttcaatttgatcattggccctttgttctaaccccaaattctgataaagattttcaatttcctttcaaaaagCCTTTCAAGGTGTTACACGGTGGTGTATCTGCTTTGATAGCCGAGTCTTTAGCAAGTATGGGAGCTCACATGGCTTCTGGTTTCAAAAGGGTCGCTGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA