Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaagtatctttacctatttttgttttccctttatgtgtctcttaagcttaacacttatacactacactctgtgtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAAAAGAATGCTGGACCAAACAAGAACTCCGTTAGAGGGTTTCAAGTAATCG

Basic information

species Arabidopsis thaliana
transcript AT1G44970.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86042620|gb|DR338375.1|DR338375
EST:     GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAG                         GGCTGTGATGCATCAATCTTGTTGGATGATAGTGCTACCATAAGAAGTGAA
genomic: GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGgtaaaagtat ... gtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAA
EST: gi|86042621|gb|DR338376.1|DR338376
EST:     GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAG                         GGCTGTGATGCATCAATCTTGTTGGATGATAGTGCTACCATAAGAAGTGAA
genomic: GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGgtaaaagtat ... gtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAA
EST: gi|86042598|gb|DR338353.1|DR338353
EST:     GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAG                         GGCTGTGATGCATCAATCTTGTTGGATGATAGTGCTACCATAAG
genomic: GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGgtaaaagtat ... gtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAG
EST: gi|86042627|gb|DR338382.1|DR338382
EST:     GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAG                         GGCTGTGATGCATCAATCTTGTTGGATGATAGTGCTACCATAAGAAGTGAA
genomic: GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGgtaaaagtat ... gtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAA
EST: gi|86042606|gb|DR338361.1|DR338361
EST:     GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAG                         GGCTGTGATGCATCAATCTTGTTGGATGATAGTGCTACCATAAGAAGTGAA
genomic: GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGgtaaaagtat ... gtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAA
EST: gi|19875700|gb|AU236531.1|AU236531
EST:     GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAG                         GGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAA
genomic: GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGgtaaaagtat ... gtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAA
EST: gi|86042589|gb|DR338344.1|DR338344
EST:     GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAG                         GGCTGTGATGCATCAATCTTGTTGGGATGATAGTGCTACCATAAGAAGTGA
genomic: GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGgtaaaagtat ... gtgtaaacagGGCTGTGATGCATCAATCTTGTTGG-ATGATAGTGCAACCATAAGAAGTGA
EST: gi|86042630|gb|DR338385.1|DR338385
EST:     GAATGGCAGCATCTTTACTCAGACTTCASTTCCACGACTGCTTCGTTCAG                         GGCTGTGATGCATCAATCTTGTTGGATGATAGTGCTACCATAAGAAGTGAA
genomic: GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGgtaaaagtat ... gtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAA
EST: gi|86042614|gb|DR338369.1|DR338369
EST:     GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAG                         GGCTGTGATGCATCAATCTTGTTGGATGATAGTGCTACCATAA
genomic: GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGgtaaaagtat ... gtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAA
EST: gi|86042612|gb|DR338367.1|DR338367
EST:     GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAG                         GGCTGTGATGCATCAATCTTGTTGGATGATAGTGCTACCATAAGAAGTGAA
genomic: GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGgtaaaagtat ... gtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAA
EST: gi|86042584|gb|DR338339.1|DR338339
EST:     GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAG                         GGCTGTGATGCATCAATCTTGTTGGATGATAGTGCTACCATAAGAAGTGAA
genomic: GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGgtaaaagtat ... gtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAA
EST: gi|86042602|gb|DR338357.1|DR338357
EST:     GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAG                         GGCTGTGATGCATCAATCTTGTTGGATGATAGTGCTACCATAAGAAGTGAA
genomic: GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGgtaaaagtat ... gtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAA
EST: gi|86042611|gb|DR338366.1|DR338366
EST:     GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAG                         GGCTGTGATGCATCAATCTTGTTGGATGATAGTGCTACCATAAGAAGTGAA
genomic: GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGgtaaaagtat ... gtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAA
EST: gi|86042587|gb|DR338342.1|DR338342
EST:     GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAG                         GGCTGTGATGCATCAATCTT-T-GGATGATAGTGCTACCATAAGAAGTGAA
genomic: GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGgtaaaagtat ... gtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAA
EST: gi|86042601|gb|DR338356.1|DR338356
EST:     GAATGGNAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAG                         GGCTGTGATGCATCAATCTTGTTGGATGATAGTGCTACCATAAGAAGTGAA
genomic: GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGgtaaaagtat ... gtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAA
EST: gi|86042609|gb|DR338364.1|DR338364
EST:     GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAG                         GGCTGTGATGCATCAATCTTGTTGGATGATAGTGCTACCATAAGAAGTGAA
genomic: GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGgtaaaagtat ... gtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAA
EST: gi|86042607|gb|DR338362.1|DR338362
EST:     GAATGGCAGCATCTTTACTCAGATTTCACTTCCACGACTGCTTCGTTCAG                         GGCTGTGATGCATCAATCTTGTTGGATGATAGTGCTACCAT
genomic: GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGgtaaaagtat ... gtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCAT
EST: gi|86042613|gb|DR338368.1|DR338368
EST:     GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAG                         GGCTGTGATGCATCAATCTTGTTGGATGATAGTGCTACCATAAGAAGTGAA
genomic: GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGgtaaaagtat ... gtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAA
EST: gi|86042600|gb|DR338355.1|DR338355
EST:     GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAG                         GGCTGTGATGCATCAATCTTGTTGGATGATAGTGCTACCATAAGAAGTGAA
genomic: GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGgtaaaagtat ... gtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAA
EST: gi|86042618|gb|DR338373.1|DR338373
EST:     GAATGGCAGCATCTTTACTCAGACTTCASTTCCACGACTGCTTCGTTCAG                         GGCTGTGATGCATCAATCTTGTTGGATGATAGTGCTACCATAAGAAGTGAA
genomic: GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGgtaaaagtat ... gtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAA
EST: gi|86042595|gb|DR338350.1|DR338350
EST:     GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAG                         GGCTGTGATGCATCAATCTTGTTGGATGATAGTGCTACCATAAGAAGTGAA
genomic: GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGgtaaaagtat ... gtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAA
EST: gi|86042590|gb|DR338345.1|DR338345
EST:     GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAG                         GGCTGTGATGCATCAATCTTGTTGGATGATAGTGCTACCATAAGAAGTGAA
genomic: GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGgtaaaagtat ... gtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAA
EST: gi|86042615|gb|DR338370.1|DR338370
EST:     GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAG                         GGCTGTGATGCATCAATCTTGTTGGATGATAGTGCTACCATAAGAAGTGAA
genomic: GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGgtaaaagtat ... gtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAA
EST: gi|86042585|gb|DR338340.1|DR338340
EST:     GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAG                         GGCTGTGATGCATCAATCTTGTTGGATGATAGTGCTACCATAAGAAGTGAA
genomic: GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGgtaaaagtat ... gtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAA
EST: gi|86042605|gb|DR338360.1|DR338360
EST:     GAATGGCAGCATCTTTACTCAGACTTCAMTTCCACGAKTGCTTCGTTCAG                         GGCTGTGATGCATCAATCTTGTTGGATGATAGTGC
genomic: GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGgtaaaagtat ... gtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGC
EST: gi|86042629|gb|DR338384.1|DR338384
EST:     GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAG                         GGCTGTGATGCATCAATCTTGTTGGATGATAGTGCTACCATAAGAAGTGAA
genomic: GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGgtaaaagtat ... gtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAA
EST: gi|86042608|gb|DR338363.1|DR338363
EST:     GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAG                         GGCTGTGATGCATCAATCTC-TTGGATGATAGTGCTACCATAAGAAGTGAA
genomic: GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGgtaaaagtat ... gtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAA
EST: gi|86042610|gb|DR338365.1|DR338365
EST:     GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAG                         GGCTGTGATGCATCAATCTTGTTGGATGATAGTGCTACCATAAGAAGTGAA
genomic: GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGgtaaaagtat ... gtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAA
EST: gi|86042591|gb|DR338346.1|DR338346
EST:     GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAG                         GGCTGTGATGCATCAATCTT-T-GGATGATAGTGCTACCATAAGAAGTGAA
genomic: GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGgtaaaagtat ... gtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAA
EST: gi|86042617|gb|DR338372.1|DR338372
EST:     GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAG                         GGCTGTGATGCATCAATCTTGTTGGATGATAGTGCTACCATAAGAAGTGAA
genomic: GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGgtaaaagtat ... gtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAA
EST: gi|86042597|gb|DR338352.1|DR338352
EST:     GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAG                         GGCTGTGATGCATCAATCTTGTTGGATGATAGTGCTACCATAAGAAGTGAA
genomic: GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGgtaaaagtat ... gtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAA
EST: gi|86042628|gb|DR338383.1|DR338383
EST:     GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAG                         GGCTGTGATGCATCAATCTTGTTGGATGATAGTGCTACCATAAGAAGTGAA
genomic: GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGgtaaaagtat ... gtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAA
EST: gi|86042624|gb|DR338379.1|DR338379
EST:     GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAG                         GGCTGTGATGCATCAATCTTGTTGGATGATAGTGCTACCATAAGAAGTGAA
genomic: GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGgtaaaagtat ... gtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAA
EST: gi|86042616|gb|DR338371.1|DR338371
EST:     GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAG                         GACTGTGATGCATCAATCTTGTTGGATGATAGTGCTACCATAAGAAGTGGA
genomic: GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGgtaaaagtat ... gtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTG-A
EST: gi|86042626|gb|DR338381.1|DR338381
EST:     GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAG                         GGCTGTGATGCATCAATCTTGTTGGATGATAGTGCTACCATAAGAAGTGAA
genomic: GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGgtaaaagtat ... gtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAA
EST: gi|86042599|gb|DR338354.1|DR338354
EST:     GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAG                         GGCTGTGATGCATCAATCTTGTTGGATGATAGTGCTACCATAAGAAGTGAA
genomic: GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGgtaaaagtat ... gtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAA
EST: gi|86042586|gb|DR338341.1|DR338341
EST:     GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAG                         GGCTGTGATGCATCAATCTTGTTGGATGATAGTGCTACCATAAGAAGTGAA
genomic: GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGgtaaaagtat ... gtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAA
EST: gi|86042592|gb|DR338347.1|DR338347
EST:     GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAG                         GGCTGTGATGCATCAATCTTGTTGGATGATAGTGCTACCATAAGAAGTGAA
genomic: GAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGgtaaaagtat ... gtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctttatgtgtctcttaagcttaacacttatacactacactctgtgtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAAAAGAATGCTGGACCAAACAAGAACTCCGTTAGAGGGTTTCAAGTAATCG
                  gcttaac  putative branch site (score: 3)
                         acttata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaaagtatctttacctatttttgttttccctttatgtgtctcttaagcttaacacttatacactacactctgtgtgtaaacagGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAAAAGAATGCTGGACCAAACAAGAACTCCGTTAGAGGGTTTCAAGTAATCG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC