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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtctccggtgtcgagatacggagatagaggcgttattccaatctaaagtttcgatttttatcagtttttttgtttcctctgtgatacagGAGTTTCCGTTTTGGGGAAGAGTCGTAGAGATGTCTTTGCGAAAGCTTCGATTGAAATGGCGGAATCGAATTCGATACCTTCCGTTGTTGTCAATTCCTC

Basic information

species Arabidopsis thaliana
transcript AT1G25220.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116410668|gb|EG453260.1|EG453260
EST:     CACTCGCCGCCTAAACCCTTCTCTCGTTAACCCTCTTACGAATCCCACAA                         GAGTTTCCGTTTTGGGGAAGAGTCGTAGAGATGTCTTTGCGAAAGCTTCGA
genomic: CACTCGCCGCCTAAACCCTTCTCTCGTTAACCCTCTTACGAATCCCACAAgtaagtctcc ... tgtgatacagGAGTTTCCGTTTTGGGGAAGAGTCGTAGAGATGTCTTTGCGAAAGCTTCGA
EST: gi|152034114|gb|BP867970.2|BP867970
EST:     CAGTCGCCGCCTAAACCCTTCTCTCGTTAACCCTCTTACGAATCCCACAA                         GAGTTTCCGTTTGGGGGAAGAGTCGTAGAGATGTCTTTGCGAAAGCTTCGA
genomic: CACTCGCCGCCTAAACCCTTCTCTCGTTAACCCTCTTACGAATCCCACAAgtaagtctcc ... tgtgatacagGAGTTTCCGTTTTGGGGAAGAGTCGTAGAGATGTCTTTGCGAAAGCTTCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attccaatctaaagtttcgatttttatcagtttttttgtttcctctgtgatacagGAGTTTCCGTTTTGGGGAAGAGTCGTAGAGATGTCTTTGCGAAAGCTTCGATTGAAATGGCGGAATCGAATTCGATACCTTCCGTTGTTGTCAATTCCTC
      atctaaa  putative branch site (score: 3)
                              tttttttgtttcctct  putative PPT
                   atttttatcagttttt  TA-rich tract