Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164187467|gb|ES073922.1|ES073922EST: GTACCTCGCCGCCGAG GTGTTGGAGCTGGCGGGAAACGCAGCAAGGGATAACAAGAAGACACGTATA
genomic: GTACCTCGCCGCCGAGgtaatttatt ... gggttgatagGTGTTGGAGCTGGCGGGAAACGCAGCAAGGGATAACAAGAAGACACGTATA
EST:
gi|116476818|gb|EG519410.1|EG519410EST: CCGGAGCTCCGGTCTATCTCTCCGCTGTTCTCGAGTACCTCGCCGCCGAG GTGTTGGAGCTGGCGGTAAACGCAGCAAGGGATAACAAGAAGACACGTATA
genomic: CCGGAGCTCCGGTCTATCTCTCCGCTGTTCTCGAGTACCTCGCCGCCGAGgtaatttatt ... gggttgatagGTGTTGGAGCTGGCGGGAAACGCAGCAAGGGATAACAAGAAGACACGTATA
EST:
gi|116471932|gb|EG514524.1|EG514524EST: CCGGAGCTCCGGTCTATCTCTCCGCTGTTCTCGAGTACCTCGCCGCCGAG GTGTTGGAGCTGGCGGGAAA
genomic: CCGGAGCTCCGGTCTATCTCTCCGCTGTTCTCGAGTACCTCGCCGCCGAGgtaatttatt ... gggttgatagGTGTTGGAGCTGGCGGGAAA
EST:
gi|124840931|gb|EH925370.1|EH925370EST: CCGGAGCTCCGGTCTATCTCTCCGCTGTTCTCGAGTACCTCGCCGCCGAG GTGTTGGAGCTGGACGGG
genomic: CCGGAGCTCCGGTCTATCTCTCCGCTGTTCTCGAGTACCTCGCCGCCGAGgtaatttatt ... gggttgatagGTGTTGGAGCTGG-CGGG
EST:
gi|86080739|gb|DR376496.1|DR376496EST: CCGGAGCTCCGGTCTATCTCTCCGCTGTTCTCGAGTACCTCGCCGCCGAG GTGTTGGAGCTGGCGGGAAACGCAGCAAGGGATAACAAGAAGACACGTATA
genomic: CCGGAGCTCCGGTCTATCTCTCCGCTGTTCTCGAGTACCTCGCCGCCGAGgtaatttatt ... gggttgatagGTGTTGGAGCTGGCGGGAAACGCAGCAAGGGATAACAAGAAGACACGTATA
EST:
gi|124706711|gb|EH798113.1|EH798113EST: CCGGAGCTCCGGTCTATCTCTCCGCTGTTCTCGAGTACCTCGCCGCCGAG GTGTTGGAGCTGGCGG
genomic: CCGGAGCTCCGGTCTATCTCTCCGCTGTTCTCGAGTACCTCGCCGCCGAGgtaatttatt ... gggttgatagGTGTTGGAGCTGGCGG
EST:
gi|125225040|gb|EL239125.1|EL239125EST: CCGGAGCTCCGGTCTATCTCTCCGCTGTTCTCGAGTACCTCGCCGCCGAG GTGTTGGAGCTGGCGGGAAACGCAGCAAGGGATAACAAGAAGACACGTATA
genomic: CCGGAGCTCCGGTCTATCTCTCCGCTGTTCTCGAGTACCTCGCCGCCGAGgtaatttatt ... gggttgatagGTGTTGGAGCTGGCGGGAAACGCAGCAAGGGATAACAAGAAGACACGTATA
EST:
gi|125283621|gb|EL297706.1|EL297706EST: CCGGAGCTCCGGTCTATCTCTCCGCTGTTCTCGAGTACCTCGCCGCCGAG GTGTTGGAGCTGGCGGG
genomic: CCGGAGCTCCGGTCTATCTCTCCGCTGTTCTCGAGTACCTCGCCGCCGAGgtaatttatt ... gggttgatagGTGTTGGAGCTGGCGGG
EST:
gi|164094390|gb|ES079338.1|ES079338EST: CCGGAGCTCCGGTCTATCTCTCCGCTGTTCTCGAGTACCTCGCCGCCGAG GTGTTGGAGCTGGCGGG
genomic: CCGGAGCTCCGGTCTATCTCTCCGCTGTTCTCGAGTACCTCGCCGCCGAGgtaatttatt ... gggttgatagGTGTTGGAGCTGGCGGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cacatctgaattggatcttgtactgatttgattttgatttggtttgggttgatagGTGTTGGAGCTGGCGGGAAACGCAGCAAGGGATAACAAGAAGACACGTATAGTACCAAGACACATTCAGCTTGCAGTGAGGAACGATGAAGAGTTAAGCA
atttgattttgattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatttatttttcttgtcttccaatttggttttcaatttcgatttggtcacatctgaattggatcttgtactgatttgattttgatttggtttgggttgatagGTGTTGGAGCTGGCGGGAAACGCAGCAAGGGATAACAAGAAGACACGTATAGTACCAAGACACATTCAGCTTGCAGTGAGGAACGATGAAGAGTTAAGCA
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